It all depends on the programs you have access to. 3ds Max is my personal favorite. You can try the demo free at autodesk.com
To make a basic logo logo 3d I would simply import your logo as a vector to 3ds max, then play around with a bevel modifier to get the effect you like. save it as an exr (or whatever) and import to after effected!
Run a google or youtube search for "3ds Max logo tutorial" I'm sure it will come up with something useful than I can provide!